These Apple Cider Whoopie Pies are the perfect fall dessert! Soft, spiced cake-like cookies are paired with a creamy filling, all infused with the warm flavors of apple cider. A healthier version of this fall favorite lets you indulge in the sweet and comforting taste of autumn without the extra calories.
Why You’ll Love This Recipe
Fall Flavor: The perfect combination of apple cider and warm spices.
Healthier Ingredients: Uses apple cider, whole wheat flour, and a reduced sugar filling.
Perfect for Fall: Ideal for cozy gatherings, family parties, or an afternoon treat.
Make-Ahead Friendly: Easy to prepare in advance and store for later enjoyment.
Ingredients
For the Whoopie Pie Cakes:
- 1 1/2 cups whole wheat flour (or gluten-free flour for a gluten-free version)
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground ginger
- 1/4 teaspoon ground cloves
- 1/4 teaspoon salt
- 1/4 cup apple cider
- 1/4 cup unsweetened applesauce
- 1/4 cup light brown sugar (or a sugar substitute)
- 1 large egg
- 1 teaspoon vanilla extract
For the Filling:
- 1/4 cup reduced-fat cream cheese, softened
- 1/4 cup Greek yogurt (or sour cream)
- 2 tablespoons powdered erythritol (or powdered sugar substitute)
- 1 teaspoon vanilla extract
Instructions
Prepare the Whoopie Pie Cakes:
- Preheat your oven to 350°F (175°C).
- In a medium bowl, combine whole wheat flour, baking powder, baking soda, cinnamon, ginger, cloves, and salt.
- In a separate bowl, whisk together apple cider, applesauce, brown sugar, egg, and vanilla extract.
- Add the wet ingredients to the dry ingredients and mix until just combined. Do not overmix.
Bake the Cakes:
- Line a baking sheet with parchment paper.
- Spoon tablespoons of the batter onto the prepared baking sheet, spacing them about 2 inches apart.
- Bake for 10–12 minutes or until a toothpick inserted into the center of a cake comes out clean.
- Let the cakes cool on the baking sheet for a few minutes, then transfer them to a wire rack to cool completely.
Make the Filling:
- In a medium bowl, beat together the softened cream cheese, Greek yogurt, powdered erythritol, and vanilla extract until smooth and creamy.
Assemble the Whoopie Pies:
- Once the cakes are completely cooled, spread a generous amount of the filling on the flat side of one cake.
- Top with another cake, flat side down, and gently press together to form the whoopie pie.
Serve & Enjoy:
- Serve immediately or store the whoopie pies in an airtight container in the fridge for up to 3 days. They can also be frozen for longer storage.

Nutritional Information (Per Whoopie Pie, Approximate)
- Calories: 150
- Carbs: 30g
- Protein: 3g
- Fat: 3g
- Fiber: 3g
- Sugar: 10g
Tips for Success
- Let the Cakes Cool Completely: This helps the filling stay in place and prevents it from melting or oozing.
- Use Fresh Apple Cider: The best flavor comes from fresh, unfiltered apple cider.
- Make the Filling Ahead: The filling can be made in advance and refrigerated until ready to assemble.
- Adjust Sweetness: If you prefer a sweeter filling, you can adjust the amount of erythritol or powdered sugar substitute.
Why This Recipe Works
- Autumnal Flavors: The warm spices and apple cider make these whoopie pies a perfect seasonal treat.
- Healthier Option: Using whole wheat flour and a lighter filling keeps this dessert a bit lighter, without sacrificing flavor.
- Soft & Moist: The cakes stay soft and moist due to the applesauce and apple cider, creating a perfect texture for these whoopie pies.
These Apple Cider Whoopie Pies offer a comforting and delicious way to enjoy fall flavors in a lighter version. Perfect for any autumn gathering or a cozy afternoon, they’re sure to become a new seasonal favorite!
How to Make Apple Cider Whoopie Pies
12
servings20
minutes10
minutes150
kcal1
hourA delightful fall twist on the classic whoopie pie! These soft, spiced Apple Cider Whoopie Pies feature moist cake-like cookies infused with reduced apple cider and warm cinnamon, sandwiched with a creamy cinnamon-spiced buttercream or marshmallow filling. Perfect for autumn gatherings, Halloween treats, or cozy dessert nights!
Ingredients
For the Whoopie Pie Cakes:
1 1/2 cups whole wheat flour (or gluten-free flour for a gluten-free version)
1 teaspoon baking powder
1/2 teaspoon baking soda
1 teaspoon ground cinnamon
1/2 teaspoon ground ginger
1/4 teaspoon ground cloves
1/4 teaspoon salt
1/4 cup apple cider
1/4 cup unsweetened applesauce
1/4 cup light brown sugar (or a sugar substitute)
1 large egg
1 teaspoon vanilla extract
For the Filling:
1/4 cup reduced-fat cream cheese, softened
1/4 cup Greek yogurt (or sour cream)
2 tablespoons powdered erythritol (or powdered sugar substitute)
1 teaspoon vanilla extract
Instructions
- Prepare the Whoopie Pie Cakes:
Preheat your oven to 350°F (175°C).
In a medium bowl, combine whole wheat flour, baking powder, baking soda, cinnamon, ginger, cloves, and salt.
In a separate bowl, whisk together apple cider, applesauce, brown sugar, egg, and vanilla extract.
Add the wet ingredients to the dry ingredients and mix until just combined. Do not overmix. - Bake the Cakes:
Line a baking sheet with parchment paper.
Spoon tablespoons of the batter onto the prepared baking sheet, spacing them about 2 inches apart.
Bake for 10–12 minutes or until a toothpick inserted into the center of a cake comes out clean.
Let the cakes cool on the baking sheet for a few minutes, then transfer them to a wire rack to cool completely. - Make the Filling:
In a medium bowl, beat together the softened cream cheese, Greek yogurt, powdered erythritol, and vanilla extract until smooth and creamy. - Assemble the Whoopie Pies:
Once the cakes are completely cooled, spread a generous amount of the filling on the flat side of one cake.
Top with another cake, flat side down, and gently press together to form the whoopie pie. - Serve & Enjoy:
Serve immediately or store the whoopie pies in an airtight container in the fridge for up to 3 days. They can also be frozen for longer storage.
Notes
- Let the Cakes Cool Completely: This helps the filling stay in place and prevents it from melting or oozing.
Use Fresh Apple Cider: The best flavor comes from fresh, unfiltered apple cider.
Make the Filling Ahead: The filling can be made in advance and refrigerated until ready to assemble.
Adjust Sweetness: If you prefer a sweeter filling, you can adjust the amount of erythritol or powdered sugar substitute.